{"id":157,"date":"2009-04-21T11:57:56","date_gmt":"2009-04-21T09:57:56","guid":{"rendered":"http:\/\/www.steinbeck-molecular.de\/steinblog\/?p=157"},"modified":"2009-05-19T13:42:12","modified_gmt":"2009-05-19T11:42:12","slug":"oliver-karch-about-molwind-using-cdk-to-visualize-molecule-spaces-in-a-geospatial-context","status":"publish","type":"post","link":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/2009\/04\/21\/oliver-karch-about-molwind-using-cdk-to-visualize-molecule-spaces-in-a-geospatial-context\/","title":{"rendered":"Oliver Karch about Molwind &#8211; Using CDK to Visualize Molecule  Spaces in a Geospatial Context"},"content":{"rendered":"<p><img loading=\"lazy\" decoding=\"async\" class=\"size-medium wp-image-159 alignleft\" title=\"parallel_nww_mw1\" src=\"http:\/\/www.steinbeck-molecular.de\/steinblog\/wp-content\/uploads\/2009\/04\/parallel_nww_mw1-300x174.png\" alt=\"parallel_nww_mw1\" width=\"300\" height=\"174\" srcset=\"http:\/\/www.steinbeck-molecular.de\/steinblog\/wp-content\/uploads\/2009\/04\/parallel_nww_mw1-300x174.png 300w, http:\/\/www.steinbeck-molecular.de\/steinblog\/wp-content\/uploads\/2009\/04\/parallel_nww_mw1.png 683w\" sizes=\"(max-width: 300px) 100vw, 300px\" \/>Oliver Karch from Merck-Serono gave the last talk on Tuesday morning, showing how to visualize CDK to visualize molecular spaces in a way &#8220;as easy as Google Earth&#8221;. They us a workflow with Pipeline Pilot, a MolWind Server, which is Java and Apache based and then render 2D structures with CDK. The NASA Molwind client is then used for display. The map-like structure of the spaces visualized by projecting structures on a globe in this way depends of course on some kind of relationship leading to geographical neighborhood, such as similarity, common fragments, etc. They have come up with a sophisticated scheme of layers for visualization and providing a good zooming experience.<\/p>\n<p>A nice thing about molwind is that is they have open-sourced it. It lives at <a href=\"http:\/\/www.molwind.org\" target=\"_blank\">molwind.org<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Oliver Karch from Merck-Serono gave the last talk on Tuesday morning, showing how to visualize CDK to visualize molecular spaces in a way &#8220;as easy as Google Earth&#8221;. They us a workflow with Pipeline Pilot, a MolWind Server, which is Java and Apache based and then render 2D structures with CDK. The NASA Molwind client [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[23,5,15,14,7,19,29],"tags":[42,43,72],"class_list":["post-157","post","type-post","status-publish","format-standard","hentry","category-chemistry-development-kit","category-chemoinformatics","category-conferences-and-meetings","category-life-of-chris","category-open-science","category-people","category-scientific-culture","tag-cdk","tag-cheminformatics","tag-open-source"],"_links":{"self":[{"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/posts\/157"}],"collection":[{"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/comments?post=157"}],"version-history":[{"count":2,"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/posts\/157\/revisions"}],"predecessor-version":[{"id":199,"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/posts\/157\/revisions\/199"}],"wp:attachment":[{"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/media?parent=157"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/categories?post=157"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.steinbeck-molecular.de\/steinblog\/index.php\/wp-json\/wp\/v2\/tags?post=157"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}